@article{61ae86fd96ee449b817bfa3602ca2969,
title = "The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms",
abstract = "In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.",
keywords = "Cancer, Covid-19, Hackathon, K-mer, Long-reads, NGS, Structural variants, Tomatoes, Viral integration, SARS-CoV-2/genetics, Humans, Genomics, COVID-19, Software",
author = "{Kascade-Grande Collaboration} and Kimberly Walker and Divya Kalra and Rebecca Lowdon and Guangyi Chen and Sedlazeck, {Fritz J.} and Ben Busby and David Molik and Soto, {Daniela C.} and Fawaz Dabbaghie and Khleifat, {Ahmad Al} and Medhat Mahmoud and Paulin, {Luis F.} and Raza, {Muhammad Sohail} and Pfeifer, {Susanne P.} and Agustinho, {Daniel Paiva} and Elbay Aliyev and Pavel Avdeyev and Barrozo, {Enrico R.} and Sairam Behera and Kimberley Billingsley and Chong, {Li Chuin} and Deepak Choubey and {De Coster}, Wouter and Yilei Fu and Gener, {Alejandro R.} and Timothy Hefferon and Henke, {David Morgan} and Wolfram H{\"o}ps and Anastasia Illarionova and Jochum, {Michael D.} and Maria Jose and Kesharwani, {Rupesh K.} and Kolora, {Sree Rohit Raj} and Jedrzej Kubica and Priya Lakra and Damaris Lattimer and Liew, {Chia Sin} and Lo, {Bai Wei} and Chunhsuan Lo and Anneri L{\"o}tter and Sina Majidian and Mendem, {Suresh Kumar} and Rajarshi Mondal and Hiroko Ohmiya and Nasrin Parvin and Carolina Peralta and Poon, {Chi Lam} and Ramanandan Prabhakaran and Marie Saitou and Philippe Sanio",
note = "Funding Information: The hackathon was sponsored by Pacific Biosciences of California, Inc. and Oxford Nanopore Technologies Limited. We'd like to thank Richard Gibbs and the Baylor College of Medicine Human Genome Sequencing Center for hosting the hackathon. Computation was performed on the DNAnexus platform, which donated compute and storage to the hackathon. Publisher Copyright: {\textcopyright} 2022 Walker K et al..",
year = "2022",
doi = "10.12688/f1000research.110194.1",
language = "English",
volume = "11",
pages = "530",
journal = "F1000Research",
issn = "2046-1402",
publisher = "F1000 Research Ltd.",
}
