An Application Framework for the Scheduling of HPC Jobs on Hybrid Hardware Platforms for Solving Bioinformatical Problems

Hannes Brandstätter-Müller, Andreas Hölzlwimmer, Bahram Parsapour, Gerald Lirk, Peter Kulczycki

Research output: Chapter in Book/Report/Conference proceedingsConference contribution

Abstract

Managing a group of heterogeneous compute nodes, especially if the heterogeneity concerns the type of main processing unit, is a nontrivial task. This framework sets out to allow the dynamic and intelligent scheduling and distribution of computational tasks across such a hybrid environment. The framework supports dynamic managing of the tasks as well as a prediction of run times for some often-used algorithms, which allows the scheduler to further optimize the selection of compute nodes to run the calculation on.
Original languageEnglish
Title of host publication55. GMDS-Jahrestagung
PublisherAntares Computer Verlag GmbH
Pages354-355
ISBN (Print)978-3-932971-11-2
Publication statusPublished - 2010
Event55. GMDS Jahrestagung - Mannheim, Germany
Duration: 5 Sep 20109 Sep 2010
http://www.gmds2010.de

Conference

Conference55. GMDS Jahrestagung
CountryGermany
CityMannheim
Period05.09.201009.09.2010
Internet address

Keywords

  • HPC
  • bioinformatics

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