Research output

Research output per year 2018 2018 2019 2020 2023 2024 2024

• 10 Article
• 8 Conference contribution
• 5 Poster
• 1 Paper
• 2 More
  • 1 Conference article
  • 1 Doctoral Thesis

Research output per year

Research output per year

Search results

• 2024

  Computational Identification of Crucial Factors for the Development, Treatment, and Progress of Immunological Disorders

  Vetter, J., 22 May 2024, 180 p.

  Research output: Types of Theses › Doctoral Thesis

• Effektivität von KI-Modellen in der Komplikationserkennung

  Vetter, J., Strobl, M. T., Halmerbauer, G., Hochstrasser, T., Guttmann, J., Königswieser, T. & Winkler, S., 16 May 2024.

  Research output: Contribution to conference › Poster › peer-review

• IMPI: An Interface for Low-Frequency Point Mutation Identification Exemplified on Resistance Mutations in Chronic Myeloid Leukemia

  Vetter, J., Burghofer, J., Malli, T., Lin, A. M., Webersinke, G., Wiederstein, M., Winkler, S. & Schaller, S., 13 May 2024, In: BioMedInformatics. 4, 2, p. 1289-1307 19 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Chronic Myeloid Leukemia 100%
  • Point mutation 100%
  • Resistance mutations 100%
  • Mutation Identification 100%
  • Unique Molecular Identifiers 100%
• 2023

  Prediction of Patients' Length of Stay after Surgery using Multi-Model-Ensembles

  Vetter, J., Strobl, M. T., Halmerbauer, G. & Winkler, S., 2023.

  Research output: Contribution to conference › Poster › peer-review

• The Class IIA Histone Deacetylase (HDAC) Inhibitor TMP269 Downregulates Ribosomal Proteins and Has Anti-Proliferative and Pro-Apoptotic Effects on AML Cells

  Urwanisch, L., Unger, M. S., Sieberer, H., Dang, H.-H., Neuper, T., Regl, C., Vetter, J., Schaller, S., Winkler, S., Kerschbamer, E., Weichenberger, C., Krenn, P., Luciano, M., Pleyer, L., Greil, R., Huber, C., Aberger, F. & Horejs-Hoeck, J., 7 Feb 2023, In: Cancers. 15, 4, 1039.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Ribosomal Protein 100%
  • Apoptotic Effect 100%
  • Antiproliferative Activity 100%
  • Acute Myeloid Leukemia 100%
  • Acute Myeloid Leukemia Cells 100%
  5 Citations (Scopus)

• Using Explainable Artificial Intelligence for Data Based Detection of Complications in Records of Patient Treatments

  Strobl, M. T., Vetter, J., Halmerbauer, G., Königswieser, T. & Winkler, S., 10 Feb 2023, Computer Aided Systems Theory – EUROCAST 2022 - 18th International Conference, Revised Selected Papers: 18th International Conference, Las Palmas de Gran Canaria, Spain, February 20–25, 2022, Revised Selected Papers. Moreno-Díaz, R., Pichler, F. & Quesada-Arencibia, A. (eds.). Springer, p. 173-180 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13789 LNCS).

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution › peer-review

  • Model Complexity 100%
  • Patient Treatment 100%
  • Data-centric 100%
  • Explainable Artificial Intelligence 100%
  • Detection Model 100%
• 2022

  ImmunoDataAnalyzer: a bioinformatics pipeline for processing barcoded and UMI tagged immunological NGS data

  Vetter, J., Schaller, S., Heinzel, A., Aschauer, C., Reindl-Schwaighofer, R., Jelencsics, K., Hu, K., Oberbauer, R. & Winkler, S., 6 Jan 2022, In: BMC Bioinformatics. 23, 1, p. 21 21.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Immune Repertoire 100%
  • Next-generation Sequencing Data 100%
  • Bioinformatics pipeline 100%
  • Next Generation Sequencing 100%
  • Immunity 100%
  1 Citation (Scopus)

• Prädiktion der postoperativen Verweildauer auf Basis von präoperativen Routinedaten in Krankenhäusern mittels Multi-Model-Ensembles

  Vetter, J., Strobl, M. T., Halmerbauer, G., Hochstrasser, T., Guttmann, J., Königswieser, T. & Winkler, S., 17 Jun 2022.

  Research output: Contribution to conference › Poster › peer-review
• 2021

  Prospective Tracking of Donor-Reactive T-Cell Clones in the Circulation and Rejecting Human Kidney Allografts

  Aschauer, C., Jelencsics, K., Hu, K., Heinzel, A., Gregorich, M. G., Vetter, J., Schaller, S., Winkler, S. M., Weinberger, J., Pimenov, L., Gualdoni, G. A., Eder, M., Kainz, A., Troescher, A. R., Regele, H., Reindl-Schwaighofer, R., Wekerle, T., Huppa, J. B., Sykes, M. & Oberbauer, R., 14 Oct 2021, In: Frontiers in Immunology. 12, p. 750005 1 p., 750005.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Kidney Allograft 100%
  • T Cell Clone 100%
  • Donor-reactive T Cells 100%
  • T-cell Receptor Repertoire 100%
  • Human Kidney 100%
  20 Citations (Scopus)

• The NLRP3/eIF2 axis drives cell cycle progression in acute myeloid leukemia

  Luciano, M., Blöchl, C., Vetter, J., Urwanisch, L., Neuper, T., Elmer, D. P., Bauer, R., Dang, H.-H., Strandt, H., Neureiter, D., Krenn, P., Tesanovic, S., Rieser, S., Bergsleitner, O., Zell, L., Binder, S., Schaller, S., Strunk, D., Pleyer, L. & Greil, R. & 5 others, Winkler, S., Hartmann, T. N., Huber, C. G., Aberger, F. & Horejs-Hoeck, J., 25 Jun 2021, In: bioRxiv.

  Research output: Contribution to journal › Article
• 2020

  A Bioinformatics Pipeline for the Identification of Crucial Factors for Transplant Rejection Based on NGS Data

  Vetter, J., Heinzel, A., Aschauer, C., Reindl-Schwaighofer, R., Jelencsics, K., Hu, K., Oberbauer, R., Winkler, S. & Schaller, S., 2020.

  Research output: Contribution to conference › Poster

• Governance für Medizin-Benchmarking: Datenaufbereitung für KI braucht auch Governance

  Translated title of the contribution: Governance for Medical BenchmarkingArthofer, K., Strobl, M. T., Vetter, J. & Winkler, S., Aug 2020, In: BI-SPEKTRUM. 2020, 3, p. 38-41

  Research output: Contribution to journal › Article › peer-review

• H. pylori modulates DC functions via T4SS/TNFα/p38-dependent SOCS3 expression

  Sarajlic, M., Neuper, T., Vetter, J., Schaller, S., Klicznik, M. M., Gratz, I. K., Wessler, S., Posselt, G. & Horejs-Hoeck, J., 6 Oct 2020, In: Cell Communication and Signaling. 18, 1, p. 160 160.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Helicobacter Pylori (H. pylori) 100%
  • Suppressor of Cytokine Signaling 3 (SOCS3) 100%
  • T4SS 100%
  • DC Function 100%
  • Type IV Secretion System 100%
  17 Citations (Scopus)

• Identification of immunologic factors associated with allograft rejection using NGS T cell receptor repertoire data

  Vetter, J., Aschauer, C., Heinzel, A., Reindl-Schwaighofer, R., Jelencsics, K., Hu, K., Oberbauer, R., Winkler, S. & Schaller, S., 2020, In: Journal of Immunology.

  Research output: Contribution to journal › Conference article

• Next Generation Sequencing Based Analysis of the T-Cell Receptor Repertoire Reveals an Increase of Alloreactive T-Cell Clones after Kidney Transplantation

  Aschauer, C., Jelencsics, K., Hu, K., Reindl-Schwaighofer, R., Vetter, J., Heinzel, A., Kainz, A., Gualdoni, G., Schaller, S., Winkler, S. & Oberbauer, R., 2020.

  Research output: Contribution to conference › Poster

• White Box vs. Black Box Modeling: On the Performance of Deep Learning, Random Forests, and Symbolic Regression in Solving Regression Problems

  Affenzeller, M., Burlacu, B., Dorfer, V., Dorl, S., Halmerbauer, G., Königswieser, T., Kommenda, M., Vetter, J. & Winkler, S., 2020, Computer Aided Systems Theory – EUROCAST 2019 - 17th International Conference, Revised Selected Papers. Moreno-Díaz, R., Quesada-Arencibia, A. & Pichler, F. (eds.). Springer, p. 288-295 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12013 LNCS).

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution › peer-review

  • Symbolic Regression 100%
  • Machine Learning Techniques 100%
  • Medical Dataset 100%
  • Random Forest Regression 100%
  • Black-box Model 100%
  4 Citations (Scopus)
• 2019

  A Bioinformatics Pipeline for Identifying Point Mutations in CML Patients

  Vetter, J., Burghofer, J., Malli, T., Webersinke, G., Kranewitter, W., Wiederstein, M., Schaller, S. & Winkler, S., 2019, Proceedings of the 27th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB).

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution

• Chip-based Pillar Array Columns (µPAC™) for Proteomic Profiling of Signal Transduction in Acute Myeloid Leukemia

  Rieser, S., Blöchl, C., Luciano, M., Vetter, J., Horejs-Hoeck, J. & Huber, C., 2019, Proceedings of the 17th Austrian Proteomics and Metabolomics Research Symposium 2019 (APMRS 2019).

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution

• Effects of NLRP3 inhibition on cytokine release and cell proliferation in Acute Myeloid Leukemia (AML)

  Luciano, M., Bergsleitner, O., Vetter, J., Zell, L., Dang, H.-H. & Horejs-Hoeck, J., 2019.

  Research output: Contribution to conference › Paper

• IL-1β Induces SOCS2 Expression in Human Dendritic Cells

  Sarajlic, M., Neuper, T., Föhrenbach Quiroz, K. T., Michelini, S., Vetter, J., Schaller, S. & Horejs-Hoeck, J., 1 Dec 2019, In: International Journal of Molecular Sciences. 20, 23, 5931.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Human Dendritic Cells 100%
  • Interleukin-1β 100%
  • SOCS2 100%
  • Dendritic Cell Activation 27%
  • Interleukin 8 10%
  6 Citations (Scopus)

• Next generation sequencing based assessment of the alloreactive T cell receptor repertoire in kidney transplant patients during rejection: A prospective cohort study

  Aschauer, C., Jelencsics, K., Hu, K., Heinzel, A., Vetter, J., Fraunhofer, T., Schaller, S., Winkler, S., Pimenov, L., Gualdoni, G., Eder, M., Kainz, A., Regele, H., Reindl-Schwaighofer, R. & Oberbauer, R., 2 Sept 2019, In: BMC Nephrology. 20, 1, p. 346 10 p., 346.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Next-generation Sequencing 100%
  • Prospective Cohort Study 100%
  • Kidney Transplant Recipients 100%
  • T-cell Receptor Repertoire 100%
  • Autoreactive T Cells 100%
  15 Citations (Scopus)

• T-Cell Repertoire of Tissue Infiltrating T-Cells at Time of Rejection

  Reindl-Schwaighofer, R., Vetter, J., Weinberger, J., Schaller, S., Heinzel, A., Gualdoni, G., Aschauer, C., Jelencsics, K., Hu, K., Winkler, S. & Oberbauer, R., 2019, Proceedings of the American Transplant Congress.

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution
• 2018

  (Retrospektive) Prädiktion von medizinischen Komplikationen auf Basis von Routinedaten in Krankenhäusern mittels Multi-Model-Ensembles

  Translated title of the contribution: (Retrospektive) Prädiktion von medizinischen Komplikationen auf Basis von Routinedaten in Krankenhäusern mittels Multi-Model-EnsemblesVetter, J., Halmerbauer, G., Arthofer, K., Schaller, S., Ausch, C., Shamiyeh, A., Schauer, W., Königswieser, T. & Winkler, S., 2018, Proceedings of the 4th Kepler Science Day.

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution

• High-throughput Immune Repertoire Sequencing Analysis using the Software ImmunExplorer

  Vetter, J., Winkler, S., Fraunhofer, T. & Schaller, S., 2018, Proceedings of the German Conference on Bioinformatics. Computational Systems Biology

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution

• Seasonal plasticity in photoprotection modulates UV‐induced hsp gene expression in copepods from a clear lake

  Tartarotti, B., Alfreider, A., Egg, M., Saul, N., Schneider, T., Sommaruga, R. & Vetter, J., Jul 2018, In: Limnology and Oceanography. 63, 4, p. 1579-1592 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Heat Shock Protein 70 (HSP70) 100%
  • Gene Expression 100%
  • Photoprotection 100%
  • Heat Shock Protein Genes 100%
  • Copepods 100%
  7 Citations (Scopus)

• White Box Modeling, Variable Impact Analysis, and Interaction Network Identification in Biological and Medical Data Using Symbolic Regression

  Winkler, S., Schaller, S., Dorfer, V., Haghofer, A., Vetter, J. & Affenzeller, M., 2018, Proceedings of the German Conference on Bioinformatics. Computational Systems Biology

  Research output: Chapter in Book/Report/Conference proceedings › Conference contribution