TY - CHAP
T1 - Overview of Public Cancer Databases, Resources, and Visualization Tools
AU - Emmert-Streib, Frank
AU - De Matos Simoes, Ricardo
AU - Tripathi, Shailesh
AU - Dehmer, Matthias
PY - 2013/4/8
Y1 - 2013/4/8
N2 - In this chapter, we provide a general overview of incidence and mortality rates of the most severe cancer types. Further, we provide information about public databases containing valuable resources, for example, expression data or SNP arrays. Due to the complex nature of cancer, we do not limit ourselves to just one cancer type but provide information about a large variety of different cancer types. As motivation for this, we briefly review the Human Disease Network [1,2] focusing on a subnetwork thereof showing a network consisting of different cancer types. Finally, we advocate the usage of the statistical programming language R as a flexible and efficient means to integrate the multilevel sources from different databases with each other.
AB - In this chapter, we provide a general overview of incidence and mortality rates of the most severe cancer types. Further, we provide information about public databases containing valuable resources, for example, expression data or SNP arrays. Due to the complex nature of cancer, we do not limit ourselves to just one cancer type but provide information about a large variety of different cancer types. As motivation for this, we briefly review the Human Disease Network [1,2] focusing on a subnetwork thereof showing a network consisting of different cancer types. Finally, we advocate the usage of the statistical programming language R as a flexible and efficient means to integrate the multilevel sources from different databases with each other.
KW - Genetic cancer network
KW - Human disease network
KW - Lung cancer
KW - Methylation
KW - Next-generation sequencing (NGS)
KW - Protein-protein interactions
UR - http://www.scopus.com/inward/record.url?scp=84888735548&partnerID=8YFLogxK
U2 - 10.1002/9783527665471.ch2
DO - 10.1002/9783527665471.ch2
M3 - Chapter
AN - SCOPUS:84888735548
SN - 9783527332625
VL - 3
SP - 27
EP - 40
BT - Statistical Diagnostics for Cancer
PB - Wiley
ER -