A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware

Andreas Hölzlwimmer; Hannes Brandstätter-Müller; Bahram Parsapour; Peter Kulczycki; Gerald Lirk

doi:10.1007/978-3-642-27549-4_53

A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware

Andreas Hölzlwimmer, Hannes Brandstätter-Müller, Bahram Parsapour, Peter Kulczycki, Gerald Lirk

Publikation: Beitrag in Buch/Bericht/Tagungsband › Konferenzbeitrag

Abstract

To process the data available in Bioinformatics, High Performance Computing is required. To efficiently calculate the necessary data, the computational tasks need to be scheduled and maintained. We propose a method of predicting runtimes in a heterogeneous high performance computing environment as well as scheduling methods for the execution of hgih performance tasks. The heuristic method used is the feedforward artificial neural network, which utilizes a collected history of real life data to predict and schedule upcoming jobs.

Originalsprache	Englisch
Titel	Computer Aided Systems Theory, EUROCAST 2011 - 13th International Conference, Revised Selected Papers
Herausgeber (Verlag)	IUCTC Las Palmas de Gran Canaria
Seiten	416-423
Seitenumfang	8
Auflage	PART 1
ISBN (Print)	9783642275487
DOIs	https://doi.org/10.1007/978-3-642-27549-4_53
Publikationsstatus	Veröffentlicht - 2012
Veranstaltung	13th International Conference on Computer Aided Systems Theory, Eurocast 2011 - Las Palmas de Gran Canaria, Spanien Dauer: 6 Feb. 2011 → 11 Feb. 2011 http://www.iuctc.ulpgc.es/spain/eurocast2011/

Publikationsreihe

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Nummer	PART 1
Band	6927 LNCS
ISSN (Print)	0302-9743
ISSN (elektronisch)	1611-3349

Konferenz

Konferenz	13th International Conference on Computer Aided Systems Theory, Eurocast 2011
Land/Gebiet	Spanien
Ort	Las Palmas de Gran Canaria
Zeitraum	06.02.2011 → 11.02.2011
Internetadresse	http://www.iuctc.ulpgc.es/spain/eurocast2011/

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10.1007/978-3-642-27549-4_53

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Hölzlwimmer, A., Brandstätter-Müller, H., Parsapour, B., Kulczycki, P., & Lirk, G. (2012). A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware. in Computer Aided Systems Theory, EUROCAST 2011 - 13th International Conference, Revised Selected Papers (PART 1 Aufl., S. 416-423). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Band 6927 LNCS, Nr. PART 1). IUCTC Las Palmas de Gran Canaria. https://doi.org/10.1007/978-3-642-27549-4_53

Hölzlwimmer, Andreas ; Brandstätter-Müller, Hannes ; Parsapour, Bahram et al. / A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware. Computer Aided Systems Theory, EUROCAST 2011 - 13th International Conference, Revised Selected Papers. PART 1. Aufl. IUCTC Las Palmas de Gran Canaria, 2012. S. 416-423 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); PART 1).

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abstract = "To process the data available in Bioinformatics, High Performance Computing is required. To efficiently calculate the necessary data, the computational tasks need to be scheduled and maintained. We propose a method of predicting runtimes in a heterogeneous high performance computing environment as well as scheduling methods for the execution of hgih performance tasks. The heuristic method used is the feedforward artificial neural network, which utilizes a collected history of real life data to predict and schedule upcoming jobs.",

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Hölzlwimmer, A, Brandstätter-Müller, H, Parsapour, B, Kulczycki, P & Lirk, G 2012, A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware. in Computer Aided Systems Theory, EUROCAST 2011 - 13th International Conference, Revised Selected Papers. PART 1 Aufl., Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Nr. PART 1, Bd. 6927 LNCS, IUCTC Las Palmas de Gran Canaria, S. 416-423, 13th International Conference on Computer Aided Systems Theory, Eurocast 2011, Las Palmas de Gran Canaria, Spanien, 06.02.2011. https://doi.org/10.1007/978-3-642-27549-4_53

A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware. / Hölzlwimmer, Andreas; Brandstätter-Müller, Hannes; Parsapour, Bahram et al.
Computer Aided Systems Theory, EUROCAST 2011 - 13th International Conference, Revised Selected Papers. PART 1. Aufl. IUCTC Las Palmas de Gran Canaria, 2012. S. 416-423 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Band 6927 LNCS, Nr. PART 1).

Publikation: Beitrag in Buch/Bericht/Tagungsband › Konferenzbeitrag

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Hölzlwimmer A, Brandstätter-Müller H, Parsapour B, Kulczycki P , Lirk G. A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware. in Computer Aided Systems Theory, EUROCAST 2011 - 13th International Conference, Revised Selected Papers. PART 1 Aufl. IUCTC Las Palmas de Gran Canaria. 2012. S. 416-423. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); PART 1). doi: 10.1007/978-3-642-27549-4_53

A Heuristic Scheduling and Resource Management System for Solving Bioinformatical Problems via High Performance Computing on Heterogeneous Multiplatform Hardware

Abstract

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